AcetoBase ToolBox
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Protein Nucleotide Clone
  • AcetoBase reference protein clustering at 80 % threshold:  vsearch --id 0.80 --cluster_fast AcetoBase.fasta --centroids AcetoBase80.fasta
  • Multiple sequence alignment:  famsa -v -t 8 -gt upgma AcetoBase80.fasta AcetoBase80.aln
  • Phylogenetic tree:  fasttreeMP -fastest -quote AcetoBase80.aln > AcetoBase80.tree
  • Phylogenetic tree tip count:  2361
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