Latest news and updates

• 2021-11-25:  Sequence stats: NN = ~20,000; NP = ~26,000; UN = ~9,600; UP = ~3,900; Clones = ~3,100


• 2021-11-25:  Added ~4,000 Protein (NP) and ~4,000 nucleotide (NN) sequences to AcetoBase as version 2.2 update


• 2021-11-25:  Added ~4,000 Protein (UP) and ~4,000 nucleotide (UN) sequences extracted from metagenomics assemblies to AcetoBase as version 2.2 update

• 2021-09-22:  Preprint about the Changes in AcetoBase and its impact on the community profiling
▶ Singh, 2021:  Acetobase: database update and reanalysis of formyltetrahydrofolate synthetase amplicon sequencing data from the anaerobic digesters

• 2021-07-23:  Added ~4,000 Protein and ~4,000 nucleotide sequences to AcetoBase as version 2.1 update

• 2021-07-23:  Added RibocetoBase reference dataset. Check out our recent paper for more information.
▶ Singh, 2021:  Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP

Research citing AcetoBase:

• Ruaud, 2022:  Interpreting tree ensemble machine learning models with endoR


• Fuentes, 2021:  Knowing the enemy: homoacetogens in hydrogen production reactors


• Singh, 2021:  REDigest: a Python GUI for In-Silico Restriction Digestion Analysis of Genes or Complete Genome Sequences


• Singh, 2021:  Acetobase: database update and reanalysis of formyltetrahydrofolate synthetase amplicon sequencing data from the anaerobic digesters


• Singh, 2021:  Microbiological Surveillance of Biogas Plants: Targeting Acetogenic Community


• Niz, 2021:  Sugarcane vinasse extreme thermophilic digestion: a glimpse on biogas free management


• Singh, 2021:  Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP


• Contreras-Dávila, 2021:  nZVI Impacts Substrate Conversion and Microbiome Composition in Chain Elongation From D- and L-Lactate Substrates


• Singh, 2020:  High-Throughput Sequencing and Unsupervised Analysis of Formyltetrahydrofolate Synthetase (FTHFS) Gene Amplicons to Estimate Acetogenic Community Structure

If you use AcetoBase, please cite as:

• Abhijeet Singh, Bettina Müller, Hans-Henrik Fuxelius, Anna Schnürer,
• AcetoBase: a functional gene repository and database for formyltetrahydrofolate synthetase sequences
• Database, Volume 2019, 2019, baz142, https://doi.org/10.1093/database/baz142

Structure of AcetoBase