===>taxon: 1209989 ===> taxon_oid 650716094

Domain:Bacteria
Sequencing Status:Finished
Study Name:DOEM_782014
Genome Name / Sample Name:Tepidanaerobacter sp. Re1
Sequencing Center:DOE Joint Genome Institute (JGI)
IMG Genome ID :650716094
Phylum:Firmicutes
Class:Clostridia
Order:Thermoanaerobacterales
Family:Thermoanaerobacteraceae
Genus:Tepidanaerobacter
Species:Tepidanaerobacter acetatoxydans
IMG Product Assignment:NA
IMG Release:IMG/W 3.5
IMG Submission ID:0
JGI Project ID / ITS SP ID:402559
JGI Analysis Product Name:NA
JGI Analysis Project Type:Genome Analysis
GOLD Analysis Project ID:Ga0031156
GOLD Analysis Project Type:Genome Analysis
GOLD Sequencing Project ID:Gp0007904
GOLD Study ID:Gs0012169
Add Date:2011-08-22
Assembly Method:NA
Combined Sample:NA
Comments:NA
Distance Matrix Calc. Date:2018-01-04
Funding Agency:NA
Gene Model QC:Yes
Genome Completeness %:NA
High Quality:Yes
Is Public:Yes
NCBI Taxon ID:1209989
NCBI Project ID:50697
RefSeq Project ID:66873
Release Date:2011-12-01
Strain:Re1
Submission Type:Primary
Alt. Contact Email:Ioanna.Pagani@thermofisher.com
Alt. Contact Name:Ioanna Pagani
Alt2. Contact Emails :ipagani@lbl.gov; johannes.scholten@pnl.gov
Alt2. Contact Names :"Ionna Pagani; Scholten, Johannes"
Altitude In Meters:NA
Biotic Relationships:NA
Cell Arrangement:"Irregular  colonies, Singles"
Cell Shape:Rod-shaped
Chlorophyll concentration:NA
Clade:NA
Contact Email:johannes.scholten@pnl.gov
Contact Name:"Scholten, Johannes"
Culture Type:Isolate
Cultured:Yes
Depth In Meters:NA
Diseases:NA
Ecosystem:Engineered
Ecosystem Category:Bioreactor
Ecosystem Subtype:Unclassified
Ecosystem Type:Unclassified
Ecotype:NA
Energy Source:NA
Funding Program:DOEM
Funding Year:2007
Geographic Location:Uppsala
GOLD Sequencing Depth:NA
GOLD Sequencing Quality:Level 6: Finished
GOLD Sequencing Strategy:Whole Genome Sequencing
GPTS Proposal ID:52020
Gram Staining:Gram+
Habitat:Sludge
HMP ID:0
Host Gender:NA
Host Name:NA
Isolation:"isolated from an ammonium-rich, mesophilic, methanogenic a continuously stirred laboratory-scale reactor designated Recirc that operated at 37C and was fed with alfalfa silage"
Isolation Country:Sweden
ITS Proposal ID:NA
ITS SP ID:0
Latitude:59.865
Longhurst Code:NA
Longhurst Description:NA
Longitude:17.63
Medical Record Number:NA
Metabolism:"Acetate oxidizer, Methanogen"
Motility:NA
NCBI Bioproject Accession:PRJNA50697
NCBI Biosample Accession:SAMN00713617
Nitrate Concentration:NA
Oxygen concentration:NA
Oxygen Requirement:Anaerobe
pH:4.0-9.5
Phenotype:NA
PMO Project ID:402559
Pressure:NA
Project / Study Name:Tepidanaerobacter sp. Re1
Proportal Isolation:NA
Proportal Ocean:NA
Proportal Station:NA
Proportal WOA Dissolved Oxygen:0
Proportal WOA Nitrate:0
Proportal WOA Phosphate:0
Proportal WOA Salinity:0
Proportal WOA Silicate:0
Proportal WOA Temperature:0
Relevance:Biofuels
Salinity:NA
Salinity Concentration:NA
Sample Body Site:NA
Sample Body Subsite:NA
Sample Collection Date :NA
Sample Collection Temperature:NA
Seq Status:Complete
Sequencing Method:454
Specific Ecosystem:Unclassified
Sporulation:Sporulating
Temperature Range:Mesophile
Type Strain:Yes
Uncultured Type:NA
Visits:NA
Genome Size   * both:2759867
Gene Count   * both:2700
Scaffold Count   * both:1
Genome Bin Count   * both:0
CRISPR Count   * both:6
GC Count   * both:1035897
GC   * both:0.38
Coding Base Count   * both:2440632
Coding Base Count %   * both:88.43
Coding Base Count NP :2374474
Coding Base Count NP % :86.04
CDS Count   * both:2639
CDS %   * both:0
RNA Count   * both:61
RNA %  * both:0
rRNA Count   * both:6
5S rRNA Count   * both:2
16S rRNA Count   * both:2
18S rRNA Count   * both:0
23S rRNA Count   * both:2
28S rRNA Count   * both:0
tRNA Count   * both:52
Other RNA Count   * both:3
Pseudo Genes Count :115
Pseudo Genes % :0
Unchar Count :0
Unchar % :0
Dubious Count:0
Dubious %:0
w/ Func Pred Count   * both:1983
w/ Func Pred %   * both:0
w/o function prediction  * both:656
w/o function prediction %  * both:24.3
Orthologs Count:0
Orthologs %:0
Paralogs Count:285
Paralogs %:0
Obsolete Count :0
Obsolete % :0
Revised Count :0
Revised % :0
Fused Count :37
Fused % :0
Fusion Component Count :256
Fusion component % :0
COG Count   * both:1811
COG %   * both:0
KOG Count :422
KOG % :0
Pfam Count   * both:2240
Pfam %   * both:0
TIGRfam Count   * both:1001
TIGRfam %   * both:0
Enzyme Count   * both:761
Enzyme %   * both:0
KEGG Count   * both:885
KEGG %   * both:0
Not KEGG Count   * both:1754
Not KEGG %   * both:0
KO Count   * both:1503
KO %   * both:0
Not KO Count   * both:1136
Not KO %   * both:0
MetaCyc Count   * both:679
MetaCyc %   * both:25.15
Not MetaCyc Count   * both:1960
Not MetaCyc %   * both:72.59
IMG Term Count :481
IMG Term % :0
IMG Pathwawy Count :174
IMG Pathway % :0
IMG Parts List Count :157
IMG Parts List % :0
MyIMG Annotation Count:1
MyIMG Annotation %:0
Signal Peptide Count :122
Signal Peptide % :0
Transmembrane Count :630
Transmembrane % :0
Horizontally Transferred Count:926
Horizontally Transferred %:34.3
Genome Property Count :0
Genome Property % :0
Ortholog Group Count:0
Paralog Group Count:130
COG Cluster Count   * both:1245
KOG Cluster Count :309
Pfam Cluster Count   * both:1700
TIGRfam Cluster Count   * both:913
IMG Cluster Count:0
IMG Cluster %:0
Chromosomal Cassette Gene Count:2659
Chromosomal Cassette Gene %:0
Chromosomal Cassette Count:254
Biosynthetic Cluster Gene Count  * both:66
Biosynthetic Cluster Gene %  * both:2.44
Biosynthetic Cluster Count  * both:8
InterPro Count :2274
InterPro % :0
------------------------------------------------------------------------------

===>taxon: 1209989 ===> taxon_oid 2540341113

Domain:Bacteria
Sequencing Status:Finished
Study Name:Tepidanaerobacter acetatoxydans Re1
Genome Name / Sample Name:Tepidanaerobacter acetatoxydans Re1
Sequencing Center:Swedish University of Agricultural Sciences
IMG Genome ID :2540341113
Phylum:Firmicutes
Class:Clostridia
Order:Thermoanaerobacterales
Family:Thermoanaerobacteraceae
Genus:Tepidanaerobacter
Species:Tepidanaerobacter acetatoxydans
IMG Product Assignment:Yes
IMG Release:0
IMG Submission ID:19789
JGI Project ID / ITS SP ID:0
JGI Analysis Product Name:NA
JGI Analysis Project Type:Genome Analysis
GOLD Analysis Project ID:Ga0016637
GOLD Analysis Project Type:Genome Analysis
GOLD Sequencing Project ID:Gp0034296
GOLD Study ID:Gs0040108
Add Date:2013-09-19
Assembly Method:Newbler v. 2.8
Combined Sample:NA
Comments:NA
Distance Matrix Calc. Date:2018-01-04
Funding Agency:NA
Gene Model QC:No
Genome Completeness %:NA
High Quality:Yes
Is Public:Yes
NCBI Taxon ID:1209989
NCBI Project ID:0
RefSeq Project ID:0
Release Date:2013-09-19
Strain:Re1
Submission Type:Primary
Alt. Contact Email:tbreddy@lbl.gov
Alt. Contact Name:Tatiparthi B. Reddy
Alt2. Contact Emails :shahid.manzoor@slu.se
Alt2. Contact Names :Shahid Manzoor
Altitude In Meters:NA
Biotic Relationships:NA
Cell Arrangement:"Irregular  colonies, Singles"
Cell Shape:Rod-shaped
Chlorophyll concentration:NA
Clade:NA
Contact Email:shahid.manzoor@slu.se
Contact Name:Shahid Manzoor
Culture Type:Isolate
Cultured:Yes
Depth In Meters:NA
Diseases:NA
Ecosystem:Engineered
Ecosystem Category:Bioreactor
Ecosystem Subtype:Unclassified
Ecosystem Type:Unclassified
Ecotype:NA
Energy Source:NA
Funding Program:NA
Funding Year:NA
Geographic Location:Uppsala
GOLD Sequencing Depth:NA
GOLD Sequencing Quality:Level 6: Finished
GOLD Sequencing Strategy:Whole Genome Sequencing
GPTS Proposal ID:NA
Gram Staining:Gram+
Habitat:Sludge
HMP ID:0
Host Gender:NA
Host Name:NA
Isolation:"isolated from an ammonium-rich, mesophilic, methanogenic a continuously stirred laboratory-scale reactor designated Recirc that operated at 37C and was fed with alfalfa silage"
Isolation Country:Sweden
ITS Proposal ID:NA
ITS SP ID:0
Latitude:59.865
Longhurst Code:NA
Longhurst Description:NA
Longitude:17.63
Medical Record Number:NA
Metabolism:"Acetate oxidizer, Methanogen"
Motility:NA
NCBI Bioproject Accession:PRJEB1140
NCBI Biosample Accession:NA
Nitrate Concentration:NA
Oxygen concentration:NA
Oxygen Requirement:Anaerobe
pH:4.0-9.5
Phenotype:NA
PMO Project ID:0
Pressure:NA
Project / Study Name:Tepidanaerobacter acetatoxydans Re1
Proportal Isolation:NA
Proportal Ocean:NA
Proportal Station:NA
Proportal WOA Dissolved Oxygen:0
Proportal WOA Nitrate:0
Proportal WOA Phosphate:0
Proportal WOA Salinity:0
Proportal WOA Silicate:0
Proportal WOA Temperature:0
Relevance:"Environmental, Evolution"
Salinity:NA
Salinity Concentration:NA
Sample Body Site:NA
Sample Body Subsite:NA
Sample Collection Date :NA
Sample Collection Temperature:NA
Seq Status:Complete
Sequencing Method:Ion Torrent PGM
Specific Ecosystem:Unclassified
Sporulation:Sporulating
Temperature Range:Mesophile
Type Strain:Yes
Uncultured Type:NA
Visits:NA
Genome Size   * both:2761826
Gene Count   * both:3106
Scaffold Count   * both:1
Genome Bin Count   * both:0
CRISPR Count   * both:5
GC Count   * both:1036275
GC   * both:0.38
Coding Base Count   * both:2403273
Coding Base Count %   * both:87.02
Coding Base Count NP :2403273
Coding Base Count NP % :87.02
CDS Count   * both:3048
CDS %   * both:0
RNA Count   * both:58
RNA %  * both:0
rRNA Count   * both:6
5S rRNA Count   * both:2
16S rRNA Count   * both:2
18S rRNA Count   * both:0
23S rRNA Count   * both:2
28S rRNA Count   * both:0
tRNA Count   * both:52
Other RNA Count   * both:0
Pseudo Genes Count :0
Pseudo Genes % :0
Unchar Count :0
Unchar % :0
Dubious Count:0
Dubious %:0
w/ Func Pred Count   * both:2339
w/ Func Pred %   * both:0
w/o function prediction  * both:709
w/o function prediction %  * both:22.83
Orthologs Count:0
Orthologs %:0
Paralogs Count:336
Paralogs %:0
Obsolete Count :0
Obsolete % :0
Revised Count :0
Revised % :0
Fused Count :55
Fused % :0
Fusion Component Count :225
Fusion component % :0
COG Count   * both:1662
COG %   * both:0
KOG Count :397
KOG % :0
Pfam Count   * both:2314
Pfam %   * both:0
TIGRfam Count   * both:978
TIGRfam %   * both:0
Enzyme Count   * both:822
Enzyme %   * both:0
KEGG Count   * both:942
KEGG %   * both:0
Not KEGG Count   * both:2106
Not KEGG %   * both:0
KO Count   * both:1619
KO %   * both:0
Not KO Count   * both:1429
Not KO %   * both:0
MetaCyc Count   * both:727
MetaCyc %   * both:23.41
Not MetaCyc Count   * both:2321
Not MetaCyc %   * both:74.73
IMG Term Count :345
IMG Term % :0
IMG Pathwawy Count :157
IMG Pathway % :0
IMG Parts List Count :110
IMG Parts List % :0
MyIMG Annotation Count:0
MyIMG Annotation %:0
Signal Peptide Count :108
Signal Peptide % :0
Transmembrane Count :633
Transmembrane % :0
Horizontally Transferred Count:27
Horizontally Transferred %:0.87
Genome Property Count :0
Genome Property % :0
Ortholog Group Count:0
Paralog Group Count:141
COG Cluster Count   * both:1177
KOG Cluster Count :298
Pfam Cluster Count   * both:1671
TIGRfam Cluster Count   * both:884
IMG Cluster Count:0
IMG Cluster %:0
Chromosomal Cassette Gene Count:3066
Chromosomal Cassette Gene %:0
Chromosomal Cassette Count:260
Biosynthetic Cluster Gene Count  * both:66
Biosynthetic Cluster Gene %  * both:2.12
Biosynthetic Cluster Count  * both:8
InterPro Count :1511
InterPro % :0
------------------------------------------------------------------------------